J3_4GKJ_004
3D structure
- PDB id
- 4GKJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 4GKJ|1|A|A|952, 4GKJ|1|A|G|953, 4GKJ|1|A|A|955
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4GKJ_004 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0497
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4GKJ|1|A|U|932
4GKJ|1|A|U|933
4GKJ|1|A|U|934
4GKJ|1|A|A|935
4GKJ|1|A|A|936
4GKJ|1|A|U|937
4GKJ|1|A|U|938
4GKJ|1|A|C|939
*
4GKJ|1|A|G|950
4GKJ|1|A|A|951
4GKJ|1|A|A|952
4GKJ|1|A|G|953
4GKJ|1|A|A|954
4GKJ|1|A|A|955
4GKJ|1|A|C|956
4GKJ|1|A|C|957
4GKJ|1|A|U|958
4GKJ|1|A|U|959
4GKJ|1|A|A|960
4GKJ|1|A|C|961
*
4GKJ|1|A|G|1202
4GKJ|1|A|G|1203
4GKJ|1|A|C|1204
4GKJ|1|A|G|1205
4GKJ|1|A|A|1206
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain J
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14 type Z
- Chain S
- 30S ribosomal protein S19
Coloring options: