3D structure

PDB id
4GKJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCGA
Length
25 nucleotides
Bulged bases
4GKJ|1|A|A|952, 4GKJ|1|A|G|953, 4GKJ|1|A|A|955
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4GKJ_004 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.0497
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4GKJ|1|A|U|932
4GKJ|1|A|U|933
4GKJ|1|A|U|934
4GKJ|1|A|A|935
4GKJ|1|A|A|936
4GKJ|1|A|U|937
4GKJ|1|A|U|938
4GKJ|1|A|C|939
*
4GKJ|1|A|G|950
4GKJ|1|A|A|951
4GKJ|1|A|A|952
4GKJ|1|A|G|953
4GKJ|1|A|A|954
4GKJ|1|A|A|955
4GKJ|1|A|C|956
4GKJ|1|A|C|957
4GKJ|1|A|U|958
4GKJ|1|A|U|959
4GKJ|1|A|A|960
4GKJ|1|A|C|961
*
4GKJ|1|A|G|1202
4GKJ|1|A|G|1203
4GKJ|1|A|C|1204
4GKJ|1|A|G|1205
4GKJ|1|A|A|1206

Current chains

Chain A
16S rRNA

Nearby chains

Chain J
30S ribosomal protein S10
Chain M
30S ribosomal protein S13
Chain N
30S ribosomal protein S14 type Z
Chain S
30S ribosomal protein S19

Coloring options:


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