J3_4GKJ_019

3D structure

PDB id

4GKJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAGGGAACCCG*UGGGGUGCCC*GGGAGCCCUA

Length

31 nucleotides

Bulged bases

4GKJ|1|A|A|983, 4GKJ|1|A|C|1006

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4GKJ|1|A|U|977
4GKJ|1|A|A|978
4GKJ|1|A|G|979
4GKJ|1|A|G|980
4GKJ|1|A|G|981
4GKJ|1|A|A|982
4GKJ|1|A|A|983
4GKJ|1|A|C|984
4GKJ|1|A|C|985
4GKJ|1|A|C|986
4GKJ|1|A|G|987
*
4GKJ|1|A|U|998
4GKJ|1|A|G|999
4GKJ|1|A|G|1000
4GKJ|1|A|G|1001
4GKJ|1|A|G|1002
4GKJ|1|A|U|1003
4GKJ|1|A|G|1004
4GKJ|1|A|C|1005
4GKJ|1|A|C|1006
4GKJ|1|A|C|1007
*
4GKJ|1|A|G|1014
4GKJ|1|A|G|1015
4GKJ|1|A|G|1016
4GKJ|1|A|A|1017
4GKJ|1|A|G|1018
4GKJ|1|A|C|1019
4GKJ|1|A|C|1020
4GKJ|1|A|C|1021
4GKJ|1|A|U|1022
4GKJ|1|A|A|1023

Current chains

Chain A

16S rRNA

Nearby chains