J3_4GKK_002
3D structure
- PDB id
- 4GKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4GKK_002 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0895
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
4GKK|1|A|C|913
4GKK|1|A|A|914
4GKK|1|A|A|915
4GKK|1|A|G|916
*
4GKK|1|A|C|1325
4GKK|1|A|U|1326
4GKK|1|A|A|1327
4GKK|1|A|G|1328
4GKK|1|A|U|1329
4GKK|1|A|A|1330
4GKK|1|A|A|1331
*
4GKK|1|A|U|1354
4GKK|1|A|G|1355
4GKK|1|A|A|1356
4GKK|1|A|A|1357
4GKK|1|A|U|1358
4GKK|1|A|A|1359
4GKK|1|A|C|1360
4GKK|1|A|G|1361
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
Coloring options: