3D structure

PDB id
4GKK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4GKK_002 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.0895
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

4GKK|1|A|C|913
4GKK|1|A|A|914
4GKK|1|A|A|915
4GKK|1|A|G|916
*
4GKK|1|A|C|1325
4GKK|1|A|U|1326
4GKK|1|A|A|1327
4GKK|1|A|G|1328
4GKK|1|A|U|1329
4GKK|1|A|A|1330
4GKK|1|A|A|1331
*
4GKK|1|A|U|1354
4GKK|1|A|G|1355
4GKK|1|A|A|1356
4GKK|1|A|A|1357
4GKK|1|A|U|1358
4GKK|1|A|A|1359
4GKK|1|A|C|1360
4GKK|1|A|G|1361

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9

Coloring options:


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