J3_4GKK_016

3D structure

PDB id

4GKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCUAGGGAACCCG*UGGGGUGC*GAGCCCUAGC

Length

31 nucleotides

Bulged bases

4GKK|1|A|A|983, 4GKK|1|A|G|1002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4GKK|1|A|G|975
4GKK|1|A|C|976
4GKK|1|A|U|977
4GKK|1|A|A|978
4GKK|1|A|G|979
4GKK|1|A|G|980
4GKK|1|A|G|981
4GKK|1|A|A|982
4GKK|1|A|A|983
4GKK|1|A|C|984
4GKK|1|A|C|985
4GKK|1|A|C|986
4GKK|1|A|G|987
*
4GKK|1|A|U|998
4GKK|1|A|G|999
4GKK|1|A|G|1000
4GKK|1|A|G|1001
4GKK|1|A|G|1002
4GKK|1|A|U|1003
4GKK|1|A|G|1004
4GKK|1|A|C|1005
*
4GKK|1|A|G|1016
4GKK|1|A|A|1017
4GKK|1|A|G|1018
4GKK|1|A|C|1019
4GKK|1|A|C|1020
4GKK|1|A|C|1021
4GKK|1|A|U|1022
4GKK|1|A|A|1023
4GKK|1|A|G|1024
4GKK|1|A|C|1025

Current chains

Chain A

16S rRNA

Nearby chains