J3_4IO9_005

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUG*CUAAGGUAG*CGAAAG

Length

18 nucleotides

Bulged bases

4IO9|1|X|U|1909, 4IO9|1|X|A|1954

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4IO9|1|X|C|1825
4IO9|1|X|U|1826
4IO9|1|X|G|1827
*
4IO9|1|X|C|1888
4IO9|1|X|U|1909
4IO9|1|X|A|1910
4IO9|1|X|A|1911
4IO9|1|X|G|1912
4IO9|1|X|G|1913
4IO9|1|X|U|1914
4IO9|1|X|A|1915
4IO9|1|X|G|1916
*
4IO9|1|X|C|1950
4IO9|1|X|G|1951
4IO9|1|X|A|1952
4IO9|1|X|A|1953
4IO9|1|X|A|1954
4IO9|1|X|G|1955

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2