J3_4IO9_019
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GCC*GCUUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 4IO9|1|X|A|2367, 4IO9|1|X|U|2369, 4IO9|1|X|A|2405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4IO9_019 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.1104
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4IO9|1|X|G|2261
4IO9|1|X|C|2262
4IO9|1|X|C|2263
*
4IO9|1|X|G|2363
4IO9|1|X|C|2364
4IO9|1|X|U|2365
4IO9|1|X|U|2366
4IO9|1|X|A|2367
4IO9|1|X|G|2368
4IO9|1|X|U|2369
4IO9|1|X|G|2370
4IO9|1|X|A|2371
4IO9|1|X|A|2372
4IO9|1|X|C|2373
4IO9|1|X|C|2374
*
4IO9|1|X|G|2400
4IO9|1|X|A|2401
4IO9|1|X|U|2402
4IO9|1|X|C|2403
4IO9|1|X|A|2404
4IO9|1|X|A|2405
4IO9|1|X|C|2406
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain 3
- 50S ribosomal protein L35
- Chain I
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L27
- Chain U
- 50S ribosomal protein L28
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