J3_4JI4_016

3D structure

PDB id

4JI4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

AGGGAACCC*GGGGUGCCCC*GGGGAGCCCU

Length

29 nucleotides

Bulged bases

4JI4|1|A|G|1023, 4JI4|1|A|U|1025

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4JI4|1|A|A|1001
4JI4|1|A|G|1002
4JI4|1|A|G|1003
4JI4|1|A|G|1003|||A
4JI4|1|A|A|1004
4JI4|1|A|A|1005
4JI4|1|A|C|1006
4JI4|1|A|C|1007
4JI4|1|A|C|1008
*
4JI4|1|A|G|1021
4JI4|1|A|G|1022
4JI4|1|A|G|1023
4JI4|1|A|G|1024
4JI4|1|A|U|1025
4JI4|1|A|G|1026
4JI4|1|A|C|1027
4JI4|1|A|C|1028
4JI4|1|A|C|1029
4JI4|1|A|C|1030
*
4JI4|1|A|G|1031
4JI4|1|A|G|1032
4JI4|1|A|G|1033
4JI4|1|A|G|1034
4JI4|1|A|A|1035
4JI4|1|A|G|1036
4JI4|1|A|C|1037
4JI4|1|A|C|1038
4JI4|1|A|C|1039
4JI4|1|A|U|1040

Current chains

Chain A

16S rRNA

Nearby chains