J3_4JV5_010

3D structure

PDB id

4JV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structures of pseudouridinilated stop codons with ASLs

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGG*CUAG*CG

Length

9 nucleotides

Bulged bases

4JV5|1|A|A|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4JV5_010 not in the Motif Atlas

Geometric match to J3_4LFB_011

Geometric discrepancy: 0.0806

The information below is about J3_4LFB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4JV5|1|A|C|586
4JV5|1|A|G|587
4JV5|1|A|G|588
*
4JV5|1|A|C|651
4JV5|1|A|U|652
4JV5|1|A|A|653
4JV5|1|A|G|654
*
4JV5|1|A|C|754
4JV5|1|A|G|755

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S8

Chain L

30S ribosomal protein S12

Chain O

30S ribosomal protein S15

Chain Q

30S ribosomal protein S17