J3_4JYA_004
3D structure
- PDB id
- 4JYA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structures of pseudouridinilated stop codons with ASLs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 4JYA|1|A|A|953, 4JYA|1|A|G|954, 4JYA|1|A|A|956
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4JYA_004 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0608
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4JYA|1|A|U|933
4JYA|1|A|U|934
4JYA|1|A|U|935
4JYA|1|A|A|936
4JYA|1|A|A|937
4JYA|1|A|U|938
4JYA|1|A|U|939
4JYA|1|A|C|940
*
4JYA|1|A|G|951
4JYA|1|A|A|952
4JYA|1|A|A|953
4JYA|1|A|G|954
4JYA|1|A|A|955
4JYA|1|A|A|956
4JYA|1|A|C|957
4JYA|1|A|C|958
4JYA|1|A|U|959
4JYA|1|A|U|960
4JYA|1|A|A|961
4JYA|1|A|C|962
*
4JYA|1|A|G|1203
4JYA|1|A|G|1204
4JYA|1|A|C|1205
4JYA|1|A|G|1206
4JYA|1|A|A|1207
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain J
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14
- Chain S
- 30S ribosomal protein S19
- Chain Y
- ASL-tRNA
Coloring options: