3D structure

PDB id
4KHP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCGA
Length
25 nucleotides
Bulged bases
4KHP|1|A|A|953, 4KHP|1|A|G|954, 4KHP|1|A|A|956
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4KHP_004 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.0514
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_88451.1
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

4KHP|1|A|U|933
4KHP|1|A|U|934
4KHP|1|A|U|935
4KHP|1|A|A|936
4KHP|1|A|A|937
4KHP|1|A|U|938
4KHP|1|A|U|939
4KHP|1|A|C|940
*
4KHP|1|A|G|951
4KHP|1|A|A|952
4KHP|1|A|A|953
4KHP|1|A|G|954
4KHP|1|A|A|955
4KHP|1|A|A|956
4KHP|1|A|C|957
4KHP|1|A|C|958
4KHP|1|A|U|959
4KHP|1|A|U|960
4KHP|1|A|A|961
4KHP|1|A|C|962
*
4KHP|1|A|G|1203
4KHP|1|A|G|1204
4KHP|1|A|C|1205
4KHP|1|A|G|1206
4KHP|1|A|A|1207

Current chains

Chain A
16S Ribosomal RNA

Nearby chains

Chain J
30S Ribosomal protein S10
Chain M
30S Ribosomal protein S13
Chain N
30S Ribosomal protein S14
Chain S
30S Ribosomal protein S19

Coloring options:


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