J3_4KHP_010
3D structure
- PDB id
- 4KHP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGG*CUAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 4KHP|1|A|A|637
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4KHP_010 not in the Motif Atlas
- Geometric match to J3_4LFB_011
- Geometric discrepancy: 0.0591
- The information below is about J3_4LFB_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.5
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4KHP|1|A|C|570
4KHP|1|A|G|571
4KHP|1|A|G|572
*
4KHP|1|A|C|635
4KHP|1|A|U|636
4KHP|1|A|A|637
4KHP|1|A|G|638
*
4KHP|1|A|C|738
4KHP|1|A|G|739
Current chains
- Chain A
- 16S Ribosomal RNA
Nearby chains
- Chain H
- 30S Ribosomal protein S8
- Chain L
- 30S Ribosomal protein S12
- Chain O
- 30S Ribosomal protein S15
- Chain Q
- 30S Ribosomal protein S17
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