J3_4KZY_015

3D structure

PDB id

4KZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.

Experimental method

X-RAY DIFFRACTION

Resolution

7.01 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4KZY_015 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.1842

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

4KZY|1|i|A|812
4KZY|1|i|G|813
4KZY|1|i|A|814
4KZY|1|i|G|815
*
4KZY|1|i|C|825
4KZY|1|i|A|826
4KZY|1|i|G|827
*
4KZY|1|i|C|839
4KZY|1|i|U|840
4KZY|1|i|G|841
4KZY|1|i|G|842
4KZY|1|i|A|843
4KZY|1|i|U|844

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain E

40S Ribosomal Protein S4X

Chain J

40S Ribosomal Protein S9

Chain Y

40S Ribosomal Protein S24