3D structure

PDB id
4LEL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
GCC*GCCUAGUGAACC*GAUCAAC
Length
22 nucleotides
Bulged bases
4LEL|1|RA|A|2388, 4LEL|1|RA|U|2390, 4LEL|1|RA|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4LEL_062 not in the Motif Atlas
Homologous match to J3_9DFE_015
Geometric discrepancy: 0.1286
The information below is about J3_9DFE_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

4LEL|1|RA|G|2282
4LEL|1|RA|C|2283
4LEL|1|RA|C|2284
*
4LEL|1|RA|G|2384
4LEL|1|RA|C|2385
4LEL|1|RA|C|2386
4LEL|1|RA|U|2387
4LEL|1|RA|A|2388
4LEL|1|RA|G|2389
4LEL|1|RA|U|2390
4LEL|1|RA|G|2391
4LEL|1|RA|A|2392
4LEL|1|RA|A|2393
4LEL|1|RA|C|2394
4LEL|1|RA|C|2395
*
4LEL|1|RA|G|2421
4LEL|1|RA|A|2422
4LEL|1|RA|U|2423
4LEL|1|RA|C|2424
4LEL|1|RA|A|2425
4LEL|1|RA|A|2426
4LEL|1|RA|C|2427

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R0
50S ribosomal protein L27
Chain R1
50S ribosomal protein L28
Chain R6
50S ribosomal protein L33
Chain R8
50S ribosomal protein L35
Chain RP
50S ribosomal protein L15

Coloring options:


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