3D structure

PDB id
4LEL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCGA
Length
25 nucleotides
Bulged bases
4LEL|1|QA|U|960, 4LEL|1|QA|A|975, 4LEL|1|QA|G|976, 4LEL|1|QA|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4LEL_073 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.163
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4LEL|1|QA|U|955
4LEL|1|QA|U|956
4LEL|1|QA|U|957
4LEL|1|QA|A|958
4LEL|1|QA|A|959
4LEL|1|QA|U|960
4LEL|1|QA|U|961
4LEL|1|QA|C|962
*
4LEL|1|QA|G|973
4LEL|1|QA|A|974
4LEL|1|QA|A|975
4LEL|1|QA|G|976
4LEL|1|QA|A|977
4LEL|1|QA|A|978
4LEL|1|QA|C|979
4LEL|1|QA|C|980
4LEL|1|QA|U|981
4LEL|1|QA|U|982
4LEL|1|QA|A|983
4LEL|1|QA|C|984
*
4LEL|1|QA|G|1221
4LEL|1|QA|G|1222
4LEL|1|QA|C|1223
4LEL|1|QA|G|1224
4LEL|1|QA|A|1225

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QJ
30S ribosomal protein S10
Chain QM
30S ribosomal protein S13
Chain QN
30S ribosomal protein S14
Chain QS
30S ribosomal protein S19
Chain QY
messenger RNA

Coloring options:


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