J3_4LF7_006

3D structure

PDB id

4LF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAAC*GGUGCC*GGAGCC

Length

16 nucleotides

Bulged bases

4LF7|1|A|G|1026

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LF7_006 not in the Motif Atlas

Geometric match to J3_4LFB_006

Geometric discrepancy: 0.2686

The information below is about J3_4LFB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32857.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4LF7|1|A|G|1003|||A
4LF7|1|A|A|1004
4LF7|1|A|A|1005
4LF7|1|A|C|1006
*
4LF7|1|A|G|1023
4LF7|1|A|G|1024
4LF7|1|A|U|1025
4LF7|1|A|G|1026
4LF7|1|A|C|1027
4LF7|1|A|C|1028
*
4LF7|1|A|G|1033
4LF7|1|A|G|1034
4LF7|1|A|A|1035
4LF7|1|A|G|1036
4LF7|1|A|C|1037
4LF7|1|A|C|1038

Current chains

Chain A

16S rRNA

Nearby chains