3D structure

PDB id
4LFA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.65 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4LFA_002 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.0632
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

4LFA|1|A|C|936
4LFA|1|A|A|937
4LFA|1|A|A|938
4LFA|1|A|G|939
*
4LFA|1|A|C|1344
4LFA|1|A|U|1345
4LFA|1|A|A|1346
4LFA|1|A|G|1347
4LFA|1|A|U|1348
4LFA|1|A|A|1349
4LFA|1|A|A|1350
*
4LFA|1|A|U|1372
4LFA|1|A|G|1373
4LFA|1|A|A|1374
4LFA|1|A|A|1375
4LFA|1|A|U|1376
4LFA|1|A|A|1377
4LFA|1|A|C|1378
4LFA|1|A|G|1379

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
ribosomal protein S7
Chain I
ribosomal protein S9

Coloring options:


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