J3_4LFA_006

3D structure

PDB id

4LFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GAAC*GGUGCC*GGAGCC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LFA_006 not in the Motif Atlas

Homologous match to J3_4LFB_006

Geometric discrepancy: 0.2518

The information below is about J3_4LFB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32857.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4LFA|1|A|G|1003|||A
4LFA|1|A|A|1004
4LFA|1|A|A|1005
4LFA|1|A|C|1006
*
4LFA|1|A|G|1023
4LFA|1|A|G|1024
4LFA|1|A|U|1025
4LFA|1|A|G|1026
4LFA|1|A|C|1027
4LFA|1|A|C|1028
*
4LFA|1|A|G|1033
4LFA|1|A|G|1034
4LFA|1|A|A|1035
4LFA|1|A|G|1036
4LFA|1|A|C|1037
4LFA|1|A|C|1038

Current chains

Chain A

16S rRNA

Nearby chains