J3_4LFB_003

3D structure

PDB id

4LFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4LFB|1|A|U|943
4LFB|1|A|G|944
4LFB|1|A|G|945
4LFB|1|A|A|946
*
4LFB|1|A|U|1235
4LFB|1|A|A|1236
4LFB|1|A|C|1237
*
4LFB|1|A|G|1337
4LFB|1|A|G|1338
4LFB|1|A|A|1339
4LFB|1|A|A|1340

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

ribosomal protein S9

Chain M

ribosomal protein S13

Chain U

ribosomal protein THX