J3_4LFB_009

3D structure

PDB id

4LFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4LFB|1|A|U|1240, 4LFB|1|A|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4LFB|1|A|C|1237
4LFB|1|A|A|1238
4LFB|1|A|A|1239
4LFB|1|A|U|1240
4LFB|1|A|G|1241
*
4LFB|1|A|C|1296
4LFB|1|A|C|1297
4LFB|1|A|C|1298
4LFB|1|A|A|1299
4LFB|1|A|G|1300
4LFB|1|A|U|1301
4LFB|1|A|U|1302
4LFB|1|A|C|1303
*
4LFB|1|A|G|1334
4LFB|1|A|C|1335
4LFB|1|A|C|1336
4LFB|1|A|G|1337

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

ribosomal protein S7

Chain M

ribosomal protein S13

Chain U

ribosomal protein THX