J3_4LFZ_005

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LFZ_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1489

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4LFZ|1|QA|C|936
4LFZ|1|QA|A|937
4LFZ|1|QA|A|938
4LFZ|1|QA|G|939
*
4LFZ|1|QA|C|1344
4LFZ|1|QA|U|1345
4LFZ|1|QA|A|1346
4LFZ|1|QA|G|1347
4LFZ|1|QA|U|1348
4LFZ|1|QA|A|1349
4LFZ|1|QA|A|1350
*
4LFZ|1|QA|U|1372
4LFZ|1|QA|G|1373
4LFZ|1|QA|A|1374
4LFZ|1|QA|A|1375
4LFZ|1|QA|U|1376
4LFZ|1|QA|A|1377
4LFZ|1|QA|C|1378
4LFZ|1|QA|G|1379

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QI

30S ribosomal protein S9