J3_4LFZ_061

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LFZ_061 not in the Motif Atlas

Homologous match to J3_4WF9_017

Geometric discrepancy: 0.0942

The information below is about J3_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4LFZ|1|RA|G|1424
4LFZ|1|RA|G|1425
4LFZ|1|RA|G|1426
4LFZ|1|RA|A|1427
4LFZ|1|RA|C|1428
4LFZ|1|RA|G|1429
*
4LFZ|1|RA|C|1564
4LFZ|1|RA|C|1565
*
4LFZ|1|RA|G|1568
4LFZ|1|RA|A|1569
4LFZ|1|RA|A|1570
4LFZ|1|RA|A|1571
4LFZ|1|RA|A|1572
4LFZ|1|RA|G|1573
4LFZ|1|RA|C|1574

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2