J3_4LNT_017

3D structure

PDB id

4LNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.94 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4LNT|1|RA|G|686, 4LNT|1|RA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LNT_017 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.0925

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4LNT|1|RA|C|683
4LNT|1|RA|G|684
4LNT|1|RA|A|685
4LNT|1|RA|G|686
4LNT|1|RA|C|687
4LNT|1|RA|U|688
4LNT|1|RA|A|689
*
4LNT|1|RA|U|773
4LNT|1|RA|A|774
4LNT|1|RA|G|775
*
4LNT|1|RA|C|791
4LNT|1|RA|G|792
4LNT|1|RA|A|793
4LNT|1|RA|G|794

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RD

50S ribosomal protein L2