J3_4LSK_005

3D structure

PDB id

4LSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.48 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LSK_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1332

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4LSK|1|QA|C|936
4LSK|1|QA|A|937
4LSK|1|QA|A|938
4LSK|1|QA|G|939
*
4LSK|1|QA|C|1344
4LSK|1|QA|U|1345
4LSK|1|QA|A|1346
4LSK|1|QA|G|1347
4LSK|1|QA|U|1348
4LSK|1|QA|A|1349
4LSK|1|QA|A|1350
*
4LSK|1|QA|U|1372
4LSK|1|QA|G|1373
4LSK|1|QA|A|1374
4LSK|1|QA|A|1375
4LSK|1|QA|U|1376
4LSK|1|QA|A|1377
4LSK|1|QA|C|1378
4LSK|1|QA|G|1379

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QI

30S ribosomal protein S9