J3_4LSK_077

3D structure

PDB id

4LSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.48 Å

Loop

Sequence

GCC*GCCUAGUGAACC*GAUCAAC

Length

22 nucleotides

Bulged bases

4LSK|1|YA|A|2388, 4LSK|1|YA|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LSK_077 not in the Motif Atlas

Homologous match to J3_9DFE_015

Geometric discrepancy: 0.0896

The information below is about J3_9DFE_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4LSK|1|YA|G|2282
4LSK|1|YA|C|2283
4LSK|1|YA|C|2284
*
4LSK|1|YA|G|2384
4LSK|1|YA|C|2385
4LSK|1|YA|C|2386
4LSK|1|YA|U|2387
4LSK|1|YA|A|2388
4LSK|1|YA|G|2389
4LSK|1|YA|U|2390
4LSK|1|YA|G|2391
4LSK|1|YA|A|2392
4LSK|1|YA|A|2393
4LSK|1|YA|C|2394
4LSK|1|YA|C|2395
*
4LSK|1|YA|G|2421
4LSK|1|YA|A|2422
4LSK|1|YA|U|2423
4LSK|1|YA|C|2424
4LSK|1|YA|A|2425
4LSK|1|YA|A|2426
4LSK|1|YA|C|2427

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y0

50S ribosomal protein L27

Chain Y1

50S ribosomal protein L28

Chain Y6

50S ribosomal protein L33

Chain Y8

50S ribosomal protein L35

Chain YP

50S ribosomal protein L15