3D structure

PDB id
4LSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.48 Å

Loop

Sequence
GCC*GCCUAGUGAACC*GAUCAAC
Length
22 nucleotides
Bulged bases
4LSK|1|YA|A|2388, 4LSK|1|YA|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4LSK_077 not in the Motif Atlas
Homologous match to J3_9DFE_015
Geometric discrepancy: 0.0896
The information below is about J3_9DFE_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

4LSK|1|YA|G|2282
4LSK|1|YA|C|2283
4LSK|1|YA|C|2284
*
4LSK|1|YA|G|2384
4LSK|1|YA|C|2385
4LSK|1|YA|C|2386
4LSK|1|YA|U|2387
4LSK|1|YA|A|2388
4LSK|1|YA|G|2389
4LSK|1|YA|U|2390
4LSK|1|YA|G|2391
4LSK|1|YA|A|2392
4LSK|1|YA|A|2393
4LSK|1|YA|C|2394
4LSK|1|YA|C|2395
*
4LSK|1|YA|G|2421
4LSK|1|YA|A|2422
4LSK|1|YA|U|2423
4LSK|1|YA|C|2424
4LSK|1|YA|A|2425
4LSK|1|YA|A|2426
4LSK|1|YA|C|2427

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y0
50S ribosomal protein L27
Chain Y1
50S ribosomal protein L28
Chain Y6
50S ribosomal protein L33
Chain Y8
50S ribosomal protein L35
Chain YP
50S ribosomal protein L15

Coloring options:


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