J3_4LT8_001

3D structure

PDB id

4LT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LT8_001 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.1231

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4LT8|1|QA|G|46
4LT8|1|QA|C|47
*
4LT8|1|QA|G|361
4LT8|1|QA|G|362
4LT8|1|QA|A|363
4LT8|1|QA|A|364
4LT8|1|QA|U|365
4LT8|1|QA|C|366
4LT8|1|QA|U|367
*
4LT8|1|QA|A|393
4LT8|1|QA|G|394
4LT8|1|QA|C|395

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain YI

50S ribosomal protein L9