J3_4P6F_066
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 4P6F|1|RA|A|2388, 4P6F|1|RA|U|2390, 4P6F|1|RA|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4P6F_066 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.1013
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4P6F|1|RA|G|2282
4P6F|1|RA|C|2283
4P6F|1|RA|C|2284
*
4P6F|1|RA|G|2384
4P6F|1|RA|C|2385
4P6F|1|RA|C|2386
4P6F|1|RA|U|2387
4P6F|1|RA|A|2388
4P6F|1|RA|G|2389
4P6F|1|RA|U|2390
4P6F|1|RA|G|2391
4P6F|1|RA|A|2392
4P6F|1|RA|A|2393
4P6F|1|RA|C|2394
4P6F|1|RA|C|2395
*
4P6F|1|RA|G|2421
4P6F|1|RA|A|2422
4P6F|1|RA|U|2423
4P6F|1|RA|C|2424
4P6F|1|RA|A|2425
4P6F|1|RA|A|2426
4P6F|1|RA|C|2427
Current chains
- Chain RA
- 23S ribosomal RNA
Nearby chains
- Chain QW
- Transfer RNA; tRNA
- Chain R0
- 50S ribosomal protein L27
- Chain R1
- 50S ribosomal protein L28
- Chain R6
- 50S ribosomal protein L33
- Chain R8
- 50S ribosomal protein L35
- Chain RP
- 50S ribosomal protein L15
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