J3_4P6F_078

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CACG*CGGUAAG*CGAGG

Length

16 nucleotides

Bulged bases

4P6F|1|RA|A|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4P6F|1|RA|C|2789
4P6F|1|RA|A|2790
4P6F|1|RA|C|2791
4P6F|1|RA|G|2792
*
4P6F|1|RA|C|2804
4P6F|1|RA|G|2805
4P6F|1|RA|G|2807
4P6F|1|RA|U|2808
4P6F|1|RA|A|2809
4P6F|1|RA|A|2810
4P6F|1|RA|G|2811
*
4P6F|1|RA|C|2889
4P6F|1|RA|G|2891
4P6F|1|RA|A|2892
4P6F|1|RA|G|2893
4P6F|1|RA|G|2894

Current chains

Chain RA

23S ribosomal RNA

Nearby chains

Chain RE

50S ribosomal protein L3