J3_4P95_001

3D structure

PDB id

4P95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Speciation of a group I intron into a lariat capping ribozyme (Circularly permutated ribozyme)

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GUAUC*GAAG*CAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02067.1

Basepair signature

cWW-tSS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4P95|1|A|G|7
4P95|1|A|U|8
4P95|1|A|A|9
4P95|1|A|U|10
4P95|1|A|C|11
*
4P95|1|A|G|230
4P95|1|A|A|231
4P95|1|A|A|232
4P95|1|A|G|233
*
4P95|1|A|C|257
4P95|1|A|A|258
4P95|1|A|A|259
4P95|1|A|U|260

Current chains

Chain A

RNA (192-MER)

Nearby chains