J3_4RGF_003

3D structure

PDB id

4RGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the in-line aligned env22 twister ribozyme soaked with Mn2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AGCC*GAG*CUAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4RGF_003 not in the Motif Atlas

Geometric match to J3_4RGE_003

Geometric discrepancy: 0.1043

The information below is about J3_4RGE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_22198.1

Basepair signature

cWW-cSH-F-cWW-cSS-cWW-F

Number of instances in this motif group

1

Unit IDs

4RGF|1|C|A|11
4RGF|1|C|G|12
4RGF|1|C|C|13
4RGF|1|C|C|14
*
4RGF|1|C|G|25
4RGF|1|C|A|26
4RGF|1|C|G|27
*
4RGF|1|C|C|40
4RGF|1|C|U|41
4RGF|1|C|A|42
4RGF|1|C|A|43
4RGF|1|C|U|44

Current chains

Chain C

env22 twister ribozyme

Nearby chains

Chain B

type-P1 twister ribozyme