J3_4TUD_033

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUD_033 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1674

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4TUD|1|XA|C|936
4TUD|1|XA|A|937
4TUD|1|XA|A|938
4TUD|1|XA|G|939
*
4TUD|1|XA|C|1344
4TUD|1|XA|U|1345
4TUD|1|XA|A|1346
4TUD|1|XA|G|1347
4TUD|1|XA|U|1348
4TUD|1|XA|A|1349
4TUD|1|XA|A|1350
*
4TUD|1|XA|U|1372
4TUD|1|XA|G|1373
4TUD|1|XA|A|1374
4TUD|1|XA|A|1375
4TUD|1|XA|U|1376
4TUD|1|XA|A|1377
4TUD|1|XA|C|1378
4TUD|1|XA|G|1379

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XI

30S ribosomal protein S9