J3_4U1U_029

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U1U_029 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0899

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

4U1U|1|CA|C|936
4U1U|1|CA|A|937
4U1U|1|CA|A|938
4U1U|1|CA|G|939
*
4U1U|1|CA|C|1344
4U1U|1|CA|U|1345
4U1U|1|CA|A|1346
4U1U|1|CA|G|1347
4U1U|1|CA|U|1348
4U1U|1|CA|A|1349
4U1U|1|CA|A|1350
*
4U1U|1|CA|U|1372
4U1U|1|CA|G|1373
4U1U|1|CA|A|1374
4U1U|1|CA|A|1375
4U1U|1|CA|U|1376
4U1U|1|CA|A|1377
4U1U|1|CA|C|1378
4U1U|1|CA|G|1379

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CI

30S ribosomal protein S9