J3_4U1U_075

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4U1U|1|DA|U|686, 4U1U|1|DA|A|792, 4U1U|1|DA|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U1U_075 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0867

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4U1U|1|DA|U|683
4U1U|1|DA|G|684
4U1U|1|DA|A|685
4U1U|1|DA|U|686
4U1U|1|DA|C|687
4U1U|1|DA|U|688
4U1U|1|DA|A|689
*
4U1U|1|DA|U|773
4U1U|1|DA|G|774
4U1U|1|DA|G|775
*
4U1U|1|DA|C|791
4U1U|1|DA|A|792
4U1U|1|DA|A|793
4U1U|1|DA|A|794

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DC

50S ribosomal protein L2