J3_4U1U_079
3D structure
- PDB id
- 4U1U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to quinupristin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 4U1U|1|DA|A|2388, 4U1U|1|DA|U|2390, 4U1U|1|DA|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U1U_079 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.0712
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4U1U|1|DA|G|2282
4U1U|1|DA|C|2283
4U1U|1|DA|A|2284
*
4U1U|1|DA|U|2384
4U1U|1|DA|C|2385
4U1U|1|DA|A|2386
4U1U|1|DA|U|2387
4U1U|1|DA|A|2388
4U1U|1|DA|G|2389
4U1U|1|DA|U|2390
4U1U|1|DA|G|2391
4U1U|1|DA|A|2392
4U1U|1|DA|U|2393
4U1U|1|DA|C|2394
4U1U|1|DA|C|2395
*
4U1U|1|DA|G|2421
4U1U|1|DA|C|2422
4U1U|1|DA|U|2423
4U1U|1|DA|C|2424
4U1U|1|DA|A|2425
4U1U|1|DA|A|2426
4U1U|1|DA|C|2427
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D1
- 50S ribosomal protein L33
- Chain D3
- 50S ribosomal protein L35
- Chain DL
- 50S ribosomal protein L15
- Chain DW
- 50S ribosomal protein L27
Coloring options: