3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UAU*AGAC*GGUG
Length
11 nucleotides
Bulged bases
4U1V|1|AA|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U1V_010 not in the Motif Atlas
Homologous match to J3_5J7L_010
Geometric discrepancy: 0.0885
The information below is about J3_5J7L_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82365.4
Basepair signature
cWW-F-cWW-cWW-F-F
Number of instances in this motif group
4

Unit IDs

4U1V|1|AA|U|1116
4U1V|1|AA|A|1117
4U1V|1|AA|U|1118
*
4U1V|1|AA|A|1155
4U1V|1|AA|G|1156
4U1V|1|AA|A|1157
4U1V|1|AA|C|1158
*
4U1V|1|AA|G|1181
4U1V|1|AA|G|1182
4U1V|1|AA|U|1183
4U1V|1|AA|G|1184

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AB
30S ribosomal protein S2
Chain AG
30S ribosomal protein S7
Chain AI
30S ribosomal protein S9
Chain AJ
30S ribosomal protein S10
Chain AN
30S ribosomal protein S14

Coloring options:


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