J3_4U1V_015

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U1V_015 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0746

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4U1V|1|BA|C|698
4U1V|1|BA|A|699
4U1V|1|BA|G|700
*
4U1V|1|BA|C|732
4U1V|1|BA|G|733
4U1V|1|BA|A|734
4U1V|1|BA|A|735
4U1V|1|BA|C|736
*
4U1V|1|BA|G|760
4U1V|1|BA|A|761
4U1V|1|BA|U|762
4U1V|1|BA|G|763

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2