3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UCGACC*GAAA*UA
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U1V_019 not in the Motif Atlas
Homologous match to J3_5J7L_043
Geometric discrepancy: 0.0734
The information below is about J3_5J7L_043
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92705.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW
Number of instances in this motif group
1

Unit IDs

4U1V|1|BA|U|1344
4U1V|1|BA|C|1345
4U1V|1|BA|G|1346
4U1V|1|BA|A|1347
4U1V|1|BA|C|1348
4U1V|1|BA|C|1349
*
4U1V|1|BA|G|1382
4U1V|1|BA|A|1383
4U1V|1|BA|A|1384
4U1V|1|BA|A|1385
*
4U1V|1|BA|U|1402
4U1V|1|BA|A|1403

Current chains

Chain BA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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