J3_4U1V_047

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

4U1V|1|DA|A|2518, 4U1V|1|DA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U1V_047 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0912

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4U1V|1|DA|C|2517
4U1V|1|DA|A|2518
4U1V|1|DA|U|2519
4U1V|1|DA|C|2520
*
4U1V|1|DA|G|2545
4U1V|1|DA|U|2546
4U1V|1|DA|A|2547
*
4U1V|1|DA|U|2561
4U1V|1|DA|U|2562
4U1V|1|DA|U|2563
4U1V|1|DA|A|2564
4U1V|1|DA|A|2565
4U1V|1|DA|A|2566
4U1V|1|DA|G|2567

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DK

50S ribosomal protein L14