3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GCCGUAG*CGC*GGAAC
Length
15 nucleotides
Bulged bases
4U1V|1|DB|A|108
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U1V_050 not in the Motif Atlas
Homologous match to J3_5J7L_049
Geometric discrepancy: 0.1671
The information below is about J3_5J7L_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_89095.1
Basepair signature
cWW-F-F-F-tHS-F-cWW-F-cWW
Number of instances in this motif group
1

Unit IDs

4U1V|1|DB|G|10
4U1V|1|DB|C|11
4U1V|1|DB|C|12
4U1V|1|DB|G|13
4U1V|1|DB|U|14
4U1V|1|DB|A|15
4U1V|1|DB|G|16
*
4U1V|1|DB|C|68
4U1V|1|DB|G|69
4U1V|1|DB|C|70
*
4U1V|1|DB|G|106
4U1V|1|DB|G|107
4U1V|1|DB|A|108
4U1V|1|DB|A|109
4U1V|1|DB|C|110

Current chains

Chain DB
5S rRNA

Nearby chains

Chain DA
Large subunit ribosomal RNA; LSU rRNA
Chain DO
50S ribosomal protein L18
Chain DV
50S ribosomal protein L25
Chain DW
50S ribosomal protein L27

Coloring options:


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