J3_4U1V_074

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUACC*GGGAAAG

Length

29 nucleotides

Bulged bases

4U1V|1|DA|U|34, 4U1V|1|DA|U|448, 4U1V|1|DA|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U1V|1|DA|C|32
4U1V|1|DA|C|33
4U1V|1|DA|U|34
4U1V|1|DA|G|35
*
4U1V|1|DA|C|445
4U1V|1|DA|G|446
4U1V|1|DA|A|447
4U1V|1|DA|U|448
4U1V|1|DA|A|449
4U1V|1|DA|G|450
4U1V|1|DA|U|451
4U1V|1|DA|G|452
4U1V|1|DA|A|453
4U1V|1|DA|A|454
4U1V|1|DA|C|455
4U1V|1|DA|C|456
4U1V|1|DA|A|457
4U1V|1|DA|G|458
4U1V|1|DA|U|459
4U1V|1|DA|A|460
4U1V|1|DA|C|461
4U1V|1|DA|C|462
*
4U1V|1|DA|G|467
4U1V|1|DA|G|468
4U1V|1|DA|G|469
4U1V|1|DA|A|470
4U1V|1|DA|A|471
4U1V|1|DA|A|472
4U1V|1|DA|G|473

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DE

50S ribosomal protein L4

Chain DQ

50S ribosomal protein L20

Chain DT

50S ribosomal protein L23