J3_4U1V_083

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4U1V|1|AA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U1V_083 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.2009

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4U1V|1|AA|C|990
4U1V|1|AA|U|991
4U1V|1|AA|U|992
4U1V|1|AA|G|993
4U1V|1|AA|A|994
4U1V|1|AA|C|995
4U1V|1|AA|A|996
4U1V|1|AA|U|997
*
4U1V|1|AA|A|1044
4U1V|1|AA|C|1045
4U1V|1|AA|A|1046
4U1V|1|AA|G|1047
*
4U1V|1|AA|C|1210
4U1V|1|AA|U|1211
4U1V|1|AA|U|1212
4U1V|1|AA|A|1213
4U1V|1|AA|C|1214
4U1V|1|AA|G|1215

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14