J3_4U20_065

3D structure

PDB id

4U20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4U20|1|CA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U20_065 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.2501

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4U20|1|CA|C|990
4U20|1|CA|U|991
4U20|1|CA|U|992
4U20|1|CA|G|993
4U20|1|CA|A|994
4U20|1|CA|C|995
4U20|1|CA|A|996
4U20|1|CA|U|997
*
4U20|1|CA|A|1044
4U20|1|CA|C|1045
4U20|1|CA|A|1046
4U20|1|CA|G|1047
*
4U20|1|CA|C|1210
4U20|1|CA|U|1211
4U20|1|CA|U|1212
4U20|1|CA|A|1213
4U20|1|CA|C|1214
4U20|1|CA|G|1215

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CN

30S ribosomal protein S14