J3_4U24_023

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

4U24|1|BA|A|2518, 4U24|1|BA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U24_023 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0553

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4U24|1|BA|C|2517
4U24|1|BA|A|2518
4U24|1|BA|U|2519
4U24|1|BA|C|2520
*
4U24|1|BA|G|2545
4U24|1|BA|U|2546
4U24|1|BA|A|2547
*
4U24|1|BA|U|2561
4U24|1|BA|U|2562
4U24|1|BA|U|2563
4U24|1|BA|A|2564
4U24|1|BA|A|2565
4U24|1|BA|A|2566
4U24|1|BA|G|2567

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14