J3_4U24_046

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

4U24|1|DA|U|2334, 4U24|1|DA|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U24|1|DA|C|2295
4U24|1|DA|U|2296
4U24|1|DA|A|2297
4U24|1|DA|A|2298
4U24|1|DA|U|2299
*
4U24|1|DA|A|2317
4U24|1|DA|G|2318
4U24|1|DA|G|2319
4U24|1|DA|U|2320
4U24|1|DA|U|2321
4U24|1|DA|A|2322
4U24|1|DA|G|2323
*
4U24|1|DA|C|2332
4U24|1|DA|A|2333
4U24|1|DA|U|2334
4U24|1|DA|A|2335
4U24|1|DA|A|2336
4U24|1|DA|G|2337

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DF

50S ribosomal protein L5

Chain DO

50S ribosomal protein L18

Chain DW

50S ribosomal protein L27