J3_4U24_068

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCCUG*CGAUAGUGAACCAGUAC*GGAAAGG

Length

29 nucleotides

Bulged bases

4U24|1|DA|U|34, 4U24|1|DA|U|448, 4U24|1|DA|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U24|1|DA|C|31
4U24|1|DA|C|32
4U24|1|DA|C|33
4U24|1|DA|U|34
4U24|1|DA|G|35
*
4U24|1|DA|C|445
4U24|1|DA|G|446
4U24|1|DA|A|447
4U24|1|DA|U|448
4U24|1|DA|A|449
4U24|1|DA|G|450
4U24|1|DA|U|451
4U24|1|DA|G|452
4U24|1|DA|A|453
4U24|1|DA|A|454
4U24|1|DA|C|455
4U24|1|DA|C|456
4U24|1|DA|A|457
4U24|1|DA|G|458
4U24|1|DA|U|459
4U24|1|DA|A|460
4U24|1|DA|C|461
*
4U24|1|DA|G|468
4U24|1|DA|G|469
4U24|1|DA|A|470
4U24|1|DA|A|471
4U24|1|DA|A|472
4U24|1|DA|G|473
4U24|1|DA|G|474

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DE

50S ribosomal protein L4

Chain DQ

50S ribosomal protein L20

Chain DT

50S ribosomal protein L23