J3_4U24_080

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAUG*CGUAGUCCGGAUU*AUGAAGUCG

Length

27 nucleotides

Bulged bases

4U24|1|CA|U|1240, 4U24|1|CA|U|1298, 4U24|1|CA|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U24|1|CA|C|1237
4U24|1|CA|A|1238
4U24|1|CA|A|1239
4U24|1|CA|U|1240
4U24|1|CA|G|1241
*
4U24|1|CA|C|1296
4U24|1|CA|G|1297
4U24|1|CA|U|1298
4U24|1|CA|A|1299
4U24|1|CA|G|1300
4U24|1|CA|U|1301
4U24|1|CA|C|1302
4U24|1|CA|C|1303
4U24|1|CA|G|1304
4U24|1|CA|G|1305
4U24|1|CA|A|1306
4U24|1|CA|U|1307
4U24|1|CA|U|1308
*
4U24|1|CA|A|1329
4U24|1|CA|U|1330
4U24|1|CA|G|1331
4U24|1|CA|A|1332
4U24|1|CA|A|1333
4U24|1|CA|G|1334
4U24|1|CA|U|1335
4U24|1|CA|C|1336
4U24|1|CA|G|1337

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CM

30S ribosomal protein S13