J3_4U25_021

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAGGAACUAGG*CUG*CC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U25|1|BA|G|1663
4U25|1|BA|A|1664
4U25|1|BA|A|1665
4U25|1|BA|G|1666
4U25|1|BA|G|1667
4U25|1|BA|A|1668
4U25|1|BA|A|1669
4U25|1|BA|C|1670
4U25|1|BA|U|1671
4U25|1|BA|A|1672
4U25|1|BA|G|1673
4U25|1|BA|G|1674
*
4U25|1|BA|C|1990
4U25|1|BA|U|1991
4U25|1|BA|G|1992
*
4U25|1|BA|C|1996
4U25|1|BA|C|1997

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14

Chain BP

50S ribosomal protein L19