3D structure

PDB id
4U25 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to virginiamycin M1.
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
4U25|1|BA|U|2334
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U25_023 not in the Motif Atlas
Homologous match to J3_5J7L_071
Geometric discrepancy: 0.0567
The information below is about J3_5J7L_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44961.1
Basepair signature
cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
Number of instances in this motif group
1

Unit IDs

4U25|1|BA|C|2295
4U25|1|BA|U|2296
4U25|1|BA|A|2297
4U25|1|BA|A|2298
4U25|1|BA|U|2299
*
4U25|1|BA|A|2317
4U25|1|BA|G|2318
4U25|1|BA|G|2319
4U25|1|BA|U|2320
4U25|1|BA|U|2321
4U25|1|BA|A|2322
4U25|1|BA|G|2323
*
4U25|1|BA|C|2332
4U25|1|BA|A|2333
4U25|1|BA|U|2334
4U25|1|BA|A|2335
4U25|1|BA|A|2336
4U25|1|BA|G|2337

Current chains

Chain BA
23S rRNA

Nearby chains

Chain BB
5S ribosomal RNA; 5S rRNA
Chain BF
50S ribosomal protein L5
Chain BO
50S ribosomal protein L18
Chain BW
50S ribosomal protein L27

Coloring options:


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