J3_4U25_037
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UAU*AGAC*GGUG
- Length
- 11 nucleotides
- Bulged bases
- 4U25|1|CA|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U25_037 not in the Motif Atlas
- Homologous match to J3_5J7L_010
- Geometric discrepancy: 0.1344
- The information below is about J3_5J7L_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
4U25|1|CA|U|1116
4U25|1|CA|A|1117
4U25|1|CA|U|1118
*
4U25|1|CA|A|1155
4U25|1|CA|G|1156
4U25|1|CA|A|1157
4U25|1|CA|C|1158
*
4U25|1|CA|G|1181
4U25|1|CA|G|1182
4U25|1|CA|U|1183
4U25|1|CA|G|1184
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CB
- 30S ribosomal protein S2
- Chain CI
- 30S ribosomal protein S9
- Chain CJ
- 30S ribosomal protein S10
- Chain CN
- 30S ribosomal protein S14
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