J3_4U25_040

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAC*GAUAAGC*GAUUUC

Length

16 nucleotides

Bulged bases

4U25|1|DA|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U25|1|DA|G|55
4U25|1|DA|A|56
4U25|1|DA|C|57
*
4U25|1|DA|G|70
4U25|1|DA|A|71
4U25|1|DA|U|72
4U25|1|DA|A|73
4U25|1|DA|A|74
4U25|1|DA|G|75
4U25|1|DA|C|76
*
4U25|1|DA|G|110
4U25|1|DA|A|111
4U25|1|DA|U|112
4U25|1|DA|U|113
4U25|1|DA|U|114
4U25|1|DA|C|115

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DT

50S ribosomal protein L23

Chain DY

50S ribosomal protein L29