J3_4U25_041

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGAUCUA*UGG*CAAAC

Length

16 nucleotides

Bulged bases

4U25|1|DA|U|686, 4U25|1|DA|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U25|1|DA|G|682
4U25|1|DA|U|683
4U25|1|DA|G|684
4U25|1|DA|A|685
4U25|1|DA|U|686
4U25|1|DA|C|687
4U25|1|DA|U|688
4U25|1|DA|A|689
*
4U25|1|DA|U|773
4U25|1|DA|G|774
4U25|1|DA|G|775
*
4U25|1|DA|C|791
4U25|1|DA|A|792
4U25|1|DA|A|793
4U25|1|DA|A|794
4U25|1|DA|C|795

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DC

50S ribosomal protein L2

Chain DE

50S ribosomal protein L4